Workflow

To cite the workflow, please reference the following DOI:

https://zenodo.org/badge/DOI/10.5281/zenodo.10964074.svg

Software used in workflow

Please also cite the software used in this workflow:

Tool

Citation

Fastqc

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

MultiQC

10.1093/bioinformatics/btw354

samtools

10.1093/bioinformatics/btp352

Trim Galore

10.5281/zenodo.7598955

Bowtie2

10.1038/nmeth.1923

deeptools

10.1093/nar/gkw257

damidseq_pipeline

10.1093/bioinformatics/btv386

bedtools

10.1093/bioinformatics/btq033

MACS2

10.1186/gb-2008-9-9-r137

Biopython

10.1093/bioinformatics/btp163