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DamMapper
=========

`DamMapper` is a containerized Snakemake pipeline for reproducible analysis of single/paired-end DamID-seq short read Illumina data.


**Contents**
------------

.. toctree::
    :caption: DamID
    :maxdepth: 1

    damid.rst

.. toctree::
    :caption: Software requirements
    :maxdepth: 1

    installation.rst

.. toctree::
    :caption: Usage
    :maxdepth: 1

    usage.rst

.. toctree::
    :caption: Output files
    :maxdepth: 1

    output.rst

.. toctree::
    :caption: Citation
    :maxdepth: 1

    citation.rst

.. toctree::
    :caption: Literature
    :maxdepth: 1

    literature.rst


.. toctree::
    :caption: Source code
    :maxdepth: 1

    sourcecode.rst