DamMapper

DamMapper is a containerized Snakemake pipeline for reproducible analysis of single/paired-end DamID-seq short read Illumina data.

Contents

DamID

• DamID principle
• Experimental considerations

Software requirements

• Conda/Mamba
• Snakemake
• Apptainer
• Snakefetch
• Workflow installation

Usage

• Preparing raw sequencing data
• Sample meta data and analysis settings
• Configuration of Snakemake
• Dry-run of the analysis
• Visualization of the workflow
• Running the analysis
• Report of the results
• Archive of the analysis

Output files

• Quality control
• Visualization of damid-seq data
• Peak-related plots

Citation

• Workflow
• Software used in workflow

Literature

• DamID

Source code

• Reporting issues